neat

type GenomeCompatibilityMethod string

type LoggerLevel string

type Options struct {
	// Probability of mutating a single trait param
	TraitParamMutProb float64 `yaml:"trait_param_mut_prob"`
	// Power of mutation on a single trait param
	TraitMutationPower float64 `yaml:"trait_mutation_power"`
	// The power of a link weight mutation
	WeightMutPower float64 `yaml:"weight_mut_power"`

	// Genome compatibility coefficients.
	// Compatibility = disjoint_coeff * pdg + excess_coeff * peg + mutdiff_coeff * mdmg
	DisjointCoeff float64 `yaml:"disjoint_coeff"`
	ExcessCoeff   float64 `yaml:"excess_coeff"`
	MutdiffCoeff  float64 `yaml:"mutdiff_coeff"`

	// CompatThreshold is the compatibility distance below which two genomes are considered the same species.
	CompatThreshold float64 `yaml:"compat_threshold"`

	// Probabilities of a non-mating reproduction
	MutateOnlyProb         float64 `yaml:"mutate_only_prob"`
	MutateRandomTraitProb  float64 `yaml:"mutate_random_trait_prob"`
	MutateLinkTraitProb    float64 `yaml:"mutate_link_trait_prob"`
	MutateNodeTraitProb    float64 `yaml:"mutate_node_trait_prob"`
	MutateLinkWeightsProb  float64 `yaml:"mutate_link_weights_prob"`
	MutateToggleEnableProb float64 `yaml:"mutate_toggle_enable_prob"`
	MutateGeneReenableProb float64 `yaml:"mutate_gene_reenable_prob"`
	MutateAddNodeProb      float64 `yaml:"mutate_add_node_prob"`
	MutateAddLinkProb      float64 `yaml:"mutate_add_link_prob"`
	// Probability of mutation involving disconnected input connections
	MutateConnectSensors float64 `yaml:"mutate_connect_sensors"`

	// Probabilities for cross-species mating and crossover type selection
	InterspeciesMateRate  float64 `yaml:"interspecies_mate_rate"`
	MateMultipointProb    float64 `yaml:"mate_multipoint_prob"`
	MateMultipointAvgProb float64 `yaml:"mate_multipoint_avg_prob"`
	MateSinglepointProb   float64 `yaml:"mate_singlepoint_prob"`

	// MateOnlyProb is the probability of mating without subsequent mutation
	MateOnlyProb float64 `yaml:"mate_only_prob"`
	// RecurOnlyProb forces selection of only recurrent links when adding a link
	RecurOnlyProb float64 `yaml:"recur_only_prob"`

	// PopSize is the initial population size (population is variable-size in ALife mode)
	PopSize int `yaml:"pop_size"`
	// NewLinkTries is the number of attempts mutateAddLink makes to find an unconnected pair
	NewLinkTries int `yaml:"newlink_tries"`

	// GenCompatMethod selects the genome compatibility calculation (linear or fast)
	GenCompatMethod GenomeCompatibilityMethod `yaml:"genome_compat_method"`

	// NodeActivators is the list of activation functions to choose from for new nodes
	NodeActivators []math.NodeActivationType `yaml:"-"`
	// NodeActivatorsProb are the probabilities of each activator in NodeActivators
	NodeActivatorsProb []float64 `yaml:"-"`

	// NodeActivatorsWithProbs is the YAML representation of NodeActivators+Probs
	NodeActivatorsWithProbs []string `yaml:"node_activators"`

	// LogLevel controls log output verbosity
	LogLevel string `yaml:"log_level"`
}

type Trait struct {
	// The trait ID
	Id int `yaml:"id"`
	// The learned trait parameters
	Params []float64 `yaml:"params"`
}